# Batch query to annotate Agilent Arrays

**URL:** <https://community.alliancegenome.org/t/batch-query-to-annotate-agilent-arrays/4525>\
**Category:** WormBase\
**Created:** [February 22, 2013, 5:42pm UTC](https://community.alliancegenome.org/t/batch-query-to-annotate-agilent-arrays/4525 "2013-02-22T17:42:14Z")\
**Posts on this page:** 1\
**Page:** 1

<div class="post-metadata">

**Author:** ![wraff](https://community.alliancegenome.org/letter_avatar_proxy/v4/letter/w/c4cdca/32.png) [@wraff](https://community.alliancegenome.org/u/wraff)\
**Post date:** [February 22, 2013, 5:42pm UTC](https://community.alliancegenome.org/t/batch-query-to-annotate-agilent-arrays/4525/1 "2013-02-22T17:42:14Z")

</div>

Dear WormBase community,

I’m looking for a tool for batch searching WormBase with search items like ‘AC3.13’ or ‘NM\_067382’.  
Basically I have some badly annotated Agilent microarray data (apr 8000 genes) and I’d like to comple their annotation for fields like ‘Sequence name’, ‘WB Gene ID’, ‘Concise Description’, chromosome location, protein-name, UniProt Ac, UniProt Id, GO ontologies, COG or orthologues .  
Previously I’ve used Biomart (biomart=“WS220”, dataset=“wormbase\_gene”), (with ‘SystematicName’ search items like ‘NM\_067382’, C01B10.3’, ‘AB031233’, ‘AC3.2’ or ‘AC3.3’). I realized that tha majority of my identifiers were not found, however when manually looking up several one on Wormbase, they were actually found there !  
So that’s why I’m looking for some tools directly on WormBase.  
It seems WormMart allows extracting a part (eg GO terms) or is there something I am missing ?

Thank’s in advance,  
Wolfgang