i know that there is information out there about which other genes a particular RNAi probe
might deplete, but i cannot find it. i recall this information being embedded in the Ahringer
library somewhere, but i cannot find it. can someone please post an actual link that i can
follow in order to find this information.
try http://www.dkfz.de/signaling/e-rnai3// , there you can check the targets and off-targets of your RNAi.
If you want the complete list just for the Ahringer clones, go to: ftp://caltech.wormbase.org/pub/annots/rnai/
But if you have a single clone, just use Wormbase
only has one target but
As an alternative, if you have multiple clones, you can also find the information you’re looking for directly in WormMart, specifically using the WS220 (but not WS220-bugfix) release; dataset RNAi. Enter as filter “PCR_Product”, and input your list.