in silico protein domain identification on protein

Model Organism: Worms Methods & Reagents
1

Hi
Does anyone know of an online tool to identify all possible conserved domains on your worm protein of interest? Wormbase shows only minimal features.

Thanks for your input in advance!

2

SMART, PROSITE, Pfam. I’d try multiple sites and fiddle with the settings.

3

Hi,

there’s also the NCBI Conserved Domain Database Repository at:

http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd_help.shtml

Steve