Has anyone tried Kallisto/Sleuth with worm RNAseq data? If so what source did you use for your transcriptome index?
Thanks
Has anyone tried Kallisto/Sleuth with worm RNAseq data? If so what source did you use for your transcriptome index?
Thanks
I used Kallisto for my mRNAseq data, about a year ago. My transcriptome index was from:
There are more recent wormbase releases you could use instead (WS258). Kallisto is amazingly fast at quantifying reads!