Is it possible to do RNA-seq from 500 L1s? What RNA isolation method, processing (Poly-A selection or rRNA depletion), library building kit would you use?
I am really restricted to the amount of worms I have, the max I can get is 1000 L1s.
You can totally get a great prep from those numbers.
With FACS sorted pooled cells I can get great RINs with just a few thousand cells. I use TaKaRa’s SmartSeq v4 kit combined with the Illumina Nextera XT kit for library prep. Works phenomenally.