For the Alliance organisms, GO annotations are quite extensive. However, many non-MOD organisms have few annotations, and many more are still completely unannotated. If you’re working with one of these unannotated organisms and need to annotate individual protein sequences, GO recommends using the latest version of InterProScan- which just had a release today!
Download the new version of InterProScan (5.66-98.0) here, or for more information find the InterProScan documentation here.
